rs48728886 SNP Detail

Summary

• ID
  rs48728886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81113563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAGTTGG GTCCTTGGAA
  CTCAAAGGGT ACAGAAGAGA ACTGGTTCCC CCTAAGTTCT CTTTTGACTT CTACACATGC
  ACTGTGATGC ACACACAGAC GCACACACAT GTACACACAA TAAATAAGTG TAAATAATTT
  AAAAAAAATG CAGACAGTGA TTGAAGAAGA CACCAGTCAT CAACCTCTGG TCTACATGTG
  Y
  ATTTTTTATG TACAAATACA TAAACATGTA CATATGCTAA AGTCAAAATA ATCTATCATC
  TATCTGTCTG TCTGTCTGTC TGTCTGTCTG TCTATCTATC TATCTATCTA TCTATCTATC
  TATCTATCTA TCTATCTAAC TATCATCCAT CTACCTATAT GCAAACAAAC CCATTCACTT
  GATTCTCTGG AAAGCCTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146076298	ENSMUSSNP4812036	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48728886					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81113563 () rs orientation: forward

Symbol	Name	Function Class
Gm33596	predicted gene, 33596	1097 bp downstream
Rr393005	regulatory region 393005	824 bp downstream
Rr393006	regulatory region 393006	1442 bp upstream
Rr531544	regulatory region 531544	1950 bp proximal