rs48728896 SNP Detail

Summary

• ID
  rs48728896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52220473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT TCACATCACC TACCAAAGAG
  Y
  ACACACCAAC TCAGACTGCA TTGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52720054	NES15556294	PERLEGEN	MM_PANEL2	f	SNP	C			C	C		T	C		C	T	C	C		T
ss139498602	ENSMUSSNP4290042	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T			T
ss324626432	CHEV_14_52602691	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48728896					SNP	C	T	T	C	C	T	T	C	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52720054	NES15556294	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52220473 () rs orientation: forward

Symbol	Name	Function Class
Arhgef40	Rho guanine nucleotide exchange factor 40	1703 bp upstream
Cpgi6430	CpG island 6430	1368 bp proximal
Gm62631	predicted gene, 62631	within coordinates
Rr491846	regulatory region 491846	412 bp proximal
Rr491847	regulatory region 491847	1332 bp proximal
Rr491848	regulatory region 491848	1926 bp proximal
Tssr125437	transcription start site region 125437	1472 bp upstream
Tssr125438	transcription start site region 125438	1510 bp upstream
Tssr125439	transcription start site region 125439	1680 bp upstream
Tssr125440	transcription start site region 125440	1810 bp upstream
Tssr125441	transcription start site region 125441	1841 bp upstream