rs48729076 SNP Detail

Summary

• ID
  rs48729076
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTCCCTTT GGAATAGGAA CAAAGGAATC CACAGTACAG
  ATGAATAAAC TGTGTAGCTC AAGGGCCATT AGCAACTTTC AAGAAGCATC CCACTAGTGA
  W
  TGGCAAAATC ATGAATAAAG CCCTATACCT AGTAGGCCTA TGCTGTAATG GCCCACTACT
  AGCCTCCTGG TGCTGCATCT TTCAGAAAAG GATGAGTGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133020584	ENSMUSSNP1096340	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss321756032	CHEV_6_17641662	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48729076					SNP	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691661 () rs orientation: forward

Symbol	Name	Function Class
Gm55211	predicted gene, 55211	1764 bp upstream
Rr626833	regulatory region 626833	541 bp proximal
Rr626834	regulatory region 626834	1915 bp proximal
St7	suppression of tumorigenicity 7	1918 bp upstream
Tssr55085	transcription start site region 55085	1945 bp upstream