rs48729299 SNP Detail

Summary

• ID
  rs48729299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182094295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCATATAGA AAATGGTGGT
  GTTACTGTGT TCCAAGGGCA AAGATTGTAT GTGAGGTCAG AAGGCGACAT TCCTTGTGCA
  GCATGAGTCA AGGGCAGGTA GTTTCTACCC ACAAGTTCCT GAAAAACAAC TTAAGTAACT
  ATGACCCTGA GGCCCACTGT CAAAGGTGTT CTTCACAGCT CAGCGACGTG ACTTTGAAAG
  Y
  TAGCAGCTAA AAATGAATAA AAAAACCGGC GAAATCAGAG AGCACTGATG CTGGTTTCGC
  TCAGTTTGGA TAATGCAAGG CTGATTGGCA AAGGGGACAG GTGCTTCTCA TCAGTCTCTT
  ATGACCAAGA ACACGTGAAT GCCATTCAAA GCCAATGTGC TGCAGGGAGT CAGGGAATAG
  AGAGAGGTGC CACTGCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60352053	NES15855435	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48729299					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60352053	NES15855435	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182094295 () rs orientation: forward

Symbol	Name	Function Class
Gm33887	predicted gene, 33887	698 bp downstream
Rr424897	regulatory region 424897	1376 bp proximal