rs48729459 SNP Detail

Summary

• ID
  rs48729459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141429486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCTGAA GATTAATCTA
  ACTCTCTCCA AATATGCCCA ATTGCTTGGT TCTCAGCACT TATATCCTGT TAACTGCTAA
  ATTTTATGAT TTAAGAATAA ATTCTACTCT ACTGTGACAA GATAATTGGC CCCTTCCATC
  ATCATTGGAG GACAGGTATG TTTTTTTCCT TTTAAAAATG TATTAATGTC TAATGTGCCC
  R
  TGAAATTCTT TTATTTGATA AGGAAGCACT TTGAAAATAC AGTGAAACAA TTTATTTTTA
  ATCAAAAGTC TATTCTGTGC CTCTGACCAT CACACTTGTA AAAGGAATTG AGAAATCATT
  TGAAAGTTAA AAACTGTGAA GCAAATAGAG CCACTGTGTT TGTTTAATGT CAGAACAGAC
  ATCCATCAAA AGTGTTGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61091319	NES16613470	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G	A		G
ss320994740	CHEV_3_141386689	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48729459					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61091319	NES16613470	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141429486 () rs orientation: forward

Symbol	Name	Function Class
Rr74631	regulatory region 74631	1811 bp proximal
Unc5c	unc-5 netrin receptor C	within coordinates