rs48729673 SNP Detail

Summary

• ID
  rs48729673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81331571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACACACCA GGCTGCCACA
  CCCGCTCAAA AATGGGGGCC CGGCCTTGGC ATTCAGGCAA AGACAGTATC AAGGCTGAGA
  GGCAAACCAA AGAGCAGGGT GCGGGAAGCT CTGAGAGGCC CCAAACCTAG GCATGGGGAC
  AGAGATCCTG GGGAACCCTG GCGAGGAGTG GGGAGCAGAG CAAAGGGGTG AAAGTATGGT
  R
  CTGTGGGAAC CAAGGCCCCA GGAAACCCCA GGACACCAGG CCCGGGGGCT GACGCCGGCC
  TGAGAGTGGT CTGAGGCAAC CGCTGACAGA GAGGGATCAG GGTGACATGG GATCGAGGAG
  AGATAGGAAT CAGGGTGGCG ATGATGGGAT GGGGTGACAG GAGTCAGTGA AACAGCAGGG
  GAACTGAGGG AACAGAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292418	NES16908877	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48729673					SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292418	NES16908877	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81331571 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1993	CpG island 1993	within coordinates
Ncln	nicalin	within coordinates
Rr402085	regulatory region 402085	547 bp upstream
Rr435684	regulatory region 435684	within coordinates
Rr435685	regulatory region 435685	1889 bp distal
Rr435686	regulatory region 435686	579 bp proximal
Rr435687	regulatory region 435687	698 bp proximal
Tssr98629	transcription start site region 98629	576 bp downstream
Tssr98630	transcription start site region 98630	592 bp downstream