rs48730502 SNP Detail

Summary

• ID
  rs48730502
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29300427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT CCTTTGCTTT GTACACGAGC
  R
  TTGAATCTGA GACCGCGCAC ATGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145426464	ENSMUSSNP5437628	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss325352871	CHEV_17_29218398	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48730502					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29300427 () rs orientation: forward

Symbol	Name	Function Class
Rr370203	regulatory region 370203	547 bp upstream
Rr392491	regulatory region 392491	1518 bp downstream
Rr524788	regulatory region 524788	1912 bp distal
Rr524789	regulatory region 524789	within coordinates
Tssr143493	transcription start site region 143493	123 bp upstream
Tssr147178	transcription start site region 147178	597 bp upstream