rs48730852 SNP Detail

Summary

• ID
  rs48730852
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:45947549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTCTAGCA ACCCCAGAGC ATCCCCAGAG GAGCACCCCA
  AGCATCCTAT CCCGAATCGG CGAGGGAACC ACTCCCTGGA TCTTGCTGGG GGCGGGGGGG
  K
  GGTGGTGTCA AAAGCATACC AGTGGGATAG AAAATCAAAG GTTTCCGAGA GATTAGGGTA
  GGGTGGTTTA CTGGTTATCT CTGCCTGTAC ACTTAGCAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	FVB/NJ	MA/MyJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383234387	MGP_WTSI_11_45870224	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	T	T	T	G	G	T	T	G	G	T	T	G	G	T	T	G	T	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	FVB/NJ	MA/MyJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs48730852					SNP	G	G	T	T	T	G	G	T	T	G	G	T	T	G	G	T	T	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383234387	MGP_WTSI_11_45870224	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:45947549 () rs orientation: forward

Symbol	Name	Function Class
Adam19	ADAM metallopeptidase domain 19	within coordinates
Cpgi2772	CpG island 2772	95 bp distal
Cpgi2773	CpG island 2773	340 bp proximal
Gm72342	predicted gene, 72342	within coordinates
Rr402508	regulatory region 402508	716 bp downstream
Rr445869	regulatory region 445869	720 bp distal
Rr445870	regulatory region 445870	within coordinates
Rr445871	regulatory region 445871	1287 bp proximal
Rr445872	regulatory region 445872	1451 bp proximal
Tssr3474	transcription start site region 3474	755 bp downstream
Tssr101088	transcription start site region 101088	654 bp downstream
Tssr101089	transcription start site region 101089	625 bp downstream
Tssr101090	transcription start site region 101090	547 bp downstream
Tssr101091	transcription start site region 101091	492 bp downstream
Tssr107582	transcription start site region 107582	1387 bp downstream
Tssr107583	transcription start site region 107583	1452 bp downstream