rs48731059 SNP Detail

Summary

• ID
  rs48731059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30120497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGT TTGACTCTGT CTCTGGGGGT
  R
  GGGTGGAGTT GGGGCTGAAA AACAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148677463	ENSMUSSNP982963	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss322134106	CHEV_7_31206091	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48731059					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30120497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	345 bp proximal
Hcst	hematopoietic cell signal transducer	1218 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	660 bp upstream
Rr368301	regulatory region 368301	1130 bp downstream
Rr400239	regulatory region 400239	481 bp upstream
Rr400240	regulatory region 400240	1060 bp upstream
Rr644812	regulatory region 644812	1400 bp distal
Rr644813	regulatory region 644813	728 bp distal
Rr644814	regulatory region 644814	170 bp proximal
Rr644815	regulatory region 644815	844 bp proximal
Rr644816	regulatory region 644816	1713 bp proximal
Tssr65711	transcription start site region 65711	1407 bp downstream
Tssr65712	transcription start site region 65712	1380 bp downstream
Tssr65713	transcription start site region 65713	1123 bp downstream
Tssr65714	transcription start site region 65714	652 bp upstream
Tssr65715	transcription start site region 65715	1200 bp upstream
Tssr65716	transcription start site region 65716	1317 bp upstream
Tssr65717	transcription start site region 65717	1361 bp upstream
Tssr65718	transcription start site region 65718	1389 bp upstream
Tssr71741	transcription start site region 71741	1296 bp upstream
Tssr71742	transcription start site region 71742	1200 bp upstream
Tssr71743	transcription start site region 71743	710 bp upstream
Tssr71744	transcription start site region 71744	699 bp upstream
Tssr71745	transcription start site region 71745	536 bp downstream