rs48731272 SNP Detail

Summary

• ID
  rs48731272
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:83982205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCATAC TTGTCGCTAA
  GCAGCAGTGG CTACAGGTCA TAGTTATACT AGGGACAGAG AGGTACAACT TTCCTGCTGT
  TACATAAAGT AGAGACAAAG GTTATCTAGC TGGTGTTGCT TGTAAACCAA AAAGATCCTA
  AGAGCAAGCA TGGGATGCAA GCTCTCAGGA GAGCAGAGCT AAGTCCAAGT ATCATAAACA
  S
  CATGGACCAA ACTAATGTGG TGCATCTTTA AAACCATGAG TTCCAGGATT TCAGTGTTTC
  AAGTTCCAGT AGAGATAGGC TTAGGATATA AATGTATATA CAGACAGACA GACAGACAGA
  CAGATGGGGG AACGACACTA TTTTGAACTG TGTGTAATAA CTGCATAGAA GTCATTTTCC
  AGAAAGGAAA TATAACCAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61663098	NES17611106	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48731272					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61663098	NES17611106	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:83982205 () rs orientation: forward

Symbol	Name	Function Class
Gm31386	predicted gene, 31386	458 bp downstream
Gm60518	predicted gene, 60518	1800 bp downstream
Rr469521	regulatory region 469521	618 bp distal
Rr469522	regulatory region 469522	1866 bp proximal