rs48732856 SNP Detail

Summary

• ID
  rs48732856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115929726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGTGGAA GACCAAATCA
  TGACTCAAGG ACACTTAGCT GTCAGTACAC TGTCTGCACG TATTTGGAAG ACTCCTCATG
  TGTGCTCAGA GACAGCAGCA TCCATTTCTT CCAAGAGCGC TGAGTGGATC TCACAGAGTC
  CTTATTTATG ATGAGGCTGT GAACACCACC CCTGGATCCC ACAGGGTTCA CTCACTATCC
  Y
  AAGAGGCTGC TCGTGGGACG ATGGTTCCTT TCTCGCAGAC TCCATTTTAA CAGGAGAGGG
  TGGACCTTAT GAAGCATGTC TGTTTTGACC ATGTATCTTT TGGCTCTGTT CCTATTCTCT
  ATCCCCTGTG CTTGTCACTG TGGTGGTTTG AATTAAAATG GCCTCCATAG TCCCATAGGA
  AGTGGCACTA TTAGGAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60827748	NES16023063	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48732856					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60827748	NES16023063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115929726 () rs orientation: forward

Symbol	Name	Function Class
Rr618351	regulatory region 618351	823 bp distal
Rr618352	regulatory region 618352	1035 bp distal