rs48733156 SNP Detail

Summary

• ID
  rs48733156
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122671697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGT CCCAGCTCAG GAGTGGGTGA
  Y
  TGGGGACCCA GTGGCCTTGG CTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145812293	ENSMUSSNP4934988	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss322846799	CHEV_8_124468858	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48733156					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122671697 () rs orientation: forward

Symbol	Name	Function Class
Car5a	carbonic anhydrase 5a, mitochondrial	46 bp upstream
Rr671979	regulatory region 671979	1589 bp distal
Rr671980	regulatory region 671980	within coordinates
Tssr83252	transcription start site region 83252	78 bp upstream
Tssr83253	transcription start site region 83253	50 bp upstream