rs48733271 SNP Detail

Summary

• ID
  rs48733271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:79178139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGCACT GGGCATCGAG
  AGGGAGGGAA GTGGGCATCG AGAAGCGAGC ATCTGCGGCC TCCAGGACGA CGGAGAGTGG
  GCATTTCCAG CTTTGGGGTG ATGACAGGAA GGAAAAGAGA GAGGATTCCA TGGAGGAGCT
  GGAGAAGGCA AAACCGGGAT CGTTGAGAAA TTGTCGGAGA GGAGGTTAGA GACGGTGACC
  R
  GGGATTAAGG CAGGCTTCAG GTTCTATTCT TGCAGAAAGA GCATTAACCT GGAAAGAAAT
  TGATGTCGGT CTCTGCAACT GCGGGAGGGA CGAAGGGGCT TTGTTCTGCC TTCAATGAAA
  GGAACCTGCT GTCGCGGAGG GCGCACTCAC TGATGGGGAA GCTAGGTGCC GCGTTCTGCC
  AGATACAGGT ACCGGATCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61653370	NES17602667	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48733271					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61653370	NES17602667	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79178139 () rs orientation: forward

Symbol	Name	Function Class
Arg2	arginase type II	within coordinates
Cpgi4801	CpG island 4801	within coordinates
Rr468550	regulatory region 468550	578 bp distal
Rr468551	regulatory region 468551	780 bp proximal
Tssr3873	transcription start site region 3873	576 bp downstream
Tssr114077	transcription start site region 114077	549 bp downstream
Tssr114078	transcription start site region 114078	999 bp upstream
Tssr116820	transcription start site region 116820	803 bp downstream
Tssr116821	transcription start site region 116821	828 bp downstream