rs48734620 SNP Detail

Summary

• ID
  rs48734620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25790548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTTTCTCC CGAGGCGAGA
  GCCAAGCCTG ACTCCGAACC GCGCCCGAGG TCGCCCCCGC GACTTGCCTC CCAGCCCGGA
  GGTCTCCAAG TGCAGCTAGG AGTCTCTCGC CAAACTCAAA GGAGGCGATG TACCTGCCAC
  CCTAAGCTTG TCTGGGTGGC ATAGAGCTGT GGCTCTCGAG AGCTCGGTAA CCCTAAAGGA
  R
  GCCACCTGTT TCCCAAGCCC GTGGAGGCGG CTGCAGGGAA GAACTGTGGT CTCTAATAAT
  CTCCATCTCC ACCCAAGCCG TGAGTGGTGC CCTAACCTTC AGGTCTGGGA TCCCAGCCTC
  CAATCAGACT TTCCCTGCAG ACCTGGAAAA GGCCAGTCCT GTGCAGTGTG GCCTTAGGGC
  ATCTACAGCT CTGGACAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60552839	NES16573412	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48734620					SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552839	NES16573412	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25790548 () rs orientation: forward

Symbol	Name	Function Class
Cerox1	cytoplasmic endogenous regulator of oxidative phosphorylation 1	within coordinates
Cpgi8771	CpG island 8771	within coordinates
Rr523607	regulatory region 523607	421 bp distal
Rr523608	regulatory region 523608	513 bp distal
Rr523609	regulatory region 523609	within coordinates
Sox8	SRY (sex determining region Y)-box 8	882 bp upstream
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst	within coordinates
Tssr143165	transcription start site region 143165	726 bp downstream
Tssr143166	transcription start site region 143166	643 bp downstream
Tssr146845	transcription start site region 146845	880 bp upstream