rs48734877 SNP Detail

Summary

• ID
  rs48734877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:77728387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCACATAAA ATTGCAATCC ATTCTGAGTT ATTAAGTAAA
  AGTTCCCTGA AATATAGAGT GAAATCCCAC ACAGAGACAA AATCCTGCCA CAGAGTATTA
  Y
  TGGGTTGGGT TAAACGAAAG ATTATCAGGT AGCACATAAA ACAAGTCATG TTTTTATAGA
  TATATATATA AAAAAACATG GGAAAAGGAA TAAAAGAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145115724	ENSMUSSNP2419146	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss322274911	CHEV_7_85223525	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48734877					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:77728387 () rs orientation: forward

Symbol	Name	Function Class
Gm53379	predicted gene, 53379	within coordinates
Tssr67298	transcription start site region 67298	1021 bp downstream