rs48735420 SNP Detail

Summary

• ID
  rs48735420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91054470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGACGGAG CACTTTGTCA
  GTGTAAGGGA CCACCATGAG GAGTTTCTCC TAACTTCCAG GGAGAGTTGG TTTAATTTCC
  CGAAATGCAG TGCTTTTCTA ATGTCACCAA GTTTGAATGC TCTCTGAGCA TGTCAGTTTT
  AATGTAAGCT TCCCAGACAG GCAGGTACAC ACGGAAACTC CAGAGCAGAG GTAAAGATTG
  R
  CATGAGGCAG GGAGAGCTAC GCTGTGGGAA TACCCTCCAG ACCTGAGCAG GAAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGGTGACTCA GTGGGACCCG TCCTGGCTGA
  TATGCTGAGG TATACCATGA AGGTCAGTGG TTGCCTGATG GTCTGGTACA ACTCCTAATG
  GCCCCATACT GTTTCAAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198234	NES16702766	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48735420					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198234	NES16702766	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91054470 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	673 bp downstream
Tssr47235	transcription start site region 47235	1408 bp downstream
Tssr47236	transcription start site region 47236	1369 bp downstream
Tssr47237	transcription start site region 47237	1349 bp downstream
Tssr47238	transcription start site region 47238	1290 bp downstream
Tssr47239	transcription start site region 47239	1285 bp downstream
Tssr47240	transcription start site region 47240	1266 bp downstream
Tssr47241	transcription start site region 47241	1237 bp downstream
Tssr47242	transcription start site region 47242	1212 bp downstream
Tssr47243	transcription start site region 47243	1194 bp downstream
Tssr47244	transcription start site region 47244	1155 bp downstream
Tssr47245	transcription start site region 47245	1138 bp downstream
Tssr47246	transcription start site region 47246	1084 bp downstream
Tssr47247	transcription start site region 47247	1030 bp downstream
Tssr47248	transcription start site region 47248	971 bp downstream
Tssr47249	transcription start site region 47249	910 bp downstream
Tssr47250	transcription start site region 47250	772 bp downstream
Tssr47251	transcription start site region 47251	707 bp downstream
Tssr47252	transcription start site region 47252	655 bp downstream
Tssr51814	transcription start site region 51814	1393 bp upstream
Tssr51815	transcription start site region 51815	1347 bp upstream
Tssr51816	transcription start site region 51816	1314 bp upstream