rs48735744 SNP Detail

Summary

• ID
  rs48735744
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34542668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAGGATAG GTAACCCAGG GCCCATTGGC AACTCCAGGT
  ACCCAGGAAG GAGCTCTGAC CCCATACCTG CACTCCTGTG ATGGTTGCCA GCGCTGCCAC
  T
  GAAGCGAAGT TCAGAGGAGG AGAGAGGCTG TCACCTCCGT GGGTGTGGGT CGCTTGAGGG
  AGTCGCGCCC TTGACCGCTA GCTACATCTG GAGCCAGAA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146939636	ENSMUSSNP3282048	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48735744					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34542668 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9817	CpG island 9817	within coordinates
Pkd2l2	polycystic kidney disease 2-like 2	within coordinates
Rr405581	regulatory region 405581	116 bp downstream
Tssr5274	transcription start site region 5274	208 bp downstream
Tssr150459	transcription start site region 150459	1121 bp downstream
Tssr150460	transcription start site region 150460	1104 bp downstream
Tssr150461	transcription start site region 150461	244 bp downstream
Tssr150462	transcription start site region 150462	157 bp downstream