rs48736112 SNP Detail

Summary

• ID
  rs48736112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185318976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGATCTTT CTGTTCTCTT
  CTGGTGAGTC TCTTTGGTTT GTGTTTTCTG TCTATGGTAT CCTGTTCTGC TGGTTGTTAC
  TGGTTTGCAC TGTTTTGAGT CATGGGGTAC TTGACTTTCA AGTTTGCTTT TTCTTCAAAG
  GTTATCTCAT CCTCTTATTC ATTTGTATCA CCACATGCAA TGGAGAATGA ACGGTTTTTA
  Y
  AAAGCAGCCT TCTGGAATTT TGATGGCCAT TGTGCCAGTT CCACCGAGCA CTTTGCAGAG
  AAAGGAATAG TGAGATTTCT GAACATATGG ACATGGGGAC ATGTTGTGGT ATGCCAGAGG
  AATTTGTGGG GAAATTAGAT AATTCTGGGA CAGGCTGCAA AGTGTGGTTA TCCTACCCCA
  TGTCCCCTTG TCACTATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146436971	ENSMUSSNP26291	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320177555	CHEV_1_187410658	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48736112					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185318976 () rs orientation: forward

Symbol	Name	Function Class
Rr425414	regulatory region 425414	1390 bp distal
Rr425415	regulatory region 425415	867 bp proximal