rs48737720 SNP Detail

Summary

• ID
  rs48737720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117037950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCCTCAG AGGACCTACC
  TCTTTGCCTT TTGTGGTACC TCCTTCGATC CATTCCACCG AAACACAGGA TTTCTCCACG
  TTCACTGTGC TTATATTGGC GGGGTGAATT AAGCCTATGT ATGAGAAGGT CAGAAGTTAT
  CCATGTGTCT CCTAAGAACT TAAGTTTTTT TTAAGGTGTT CTTTTTTTTT TTTTGACTGC
  R
  CCACCACTGC CTGGCCAAAC TTAAGTTTTT ATTCTCCACT TTGCTTTTAG GATCCTAAAG
  ACTTCAAATT TACATTTACC TCGGAAGGGA AATTTGTTTT GTTTTGTTTT TGTTTTTTTT
  TGTTTGTTTG TTTGTTTGTT TTTTCGAGAC AGGGTTTCTC TGTGTAGCCC TGGCTGTCCT
  GGAGCTCACT TTGTAGACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147286052	ENSMUSSNP6649523	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48737720					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117037950 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14654	CpG island 14654	1407 bp proximal
Gm68778	predicted gene, 68778	504 bp downstream
Kif2c	kinesin family member 2C	within coordinates
Rr398412	regulatory region 398412	1753 bp upstream
Tssr42963	transcription start site region 42963	1999 bp upstream
Tssr42964	transcription start site region 42964	1974 bp upstream
Tssr42965	transcription start site region 42965	1784 bp downstream
Tssr42966	transcription start site region 42966	1870 bp downstream