rs48738166 SNP Detail

Summary

• ID
  rs48738166
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172152214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA TAGGTGCAAA GTGGAGGCAG
  W
  GGCAGAGGGG GAAGAGAAGG CAGAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120009163	PARCsnp_1.18660	PARC_SEQ	INBRED	f	SNP		A	T
ss120012368	PARCsnp_1.08451	PARC_SEQ	INBRED	f	SNP		A	T
ss146187949	ENSMUSSNP137573	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320124216	CHEV_1_174254778	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48738166					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172152214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	897 bp proximal
Gm36937	predicted gene, 36937	986 bp downstream
Gm70847	predicted gene, 70847	1633 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	within coordinates
Rr423525	regulatory region 423525	258 bp proximal
Rr423526	regulatory region 423526	448 bp proximal
Rr423527	regulatory region 423527	1143 bp proximal
Rr423528	regulatory region 423528	1250 bp proximal
Rr423529	regulatory region 423529	1665 bp proximal
Tssr15210	transcription start site region 15210	1571 bp downstream
Tssr15211	transcription start site region 15211	1581 bp downstream
Tssr15212	transcription start site region 15212	1601 bp downstream