rs48738396 SNP Detail

Summary

• ID
  rs48738396
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:173154826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG GGGATCTTCC ATCCTTTTCT
  G
  TCTTCTGTCA AATACACATC CAGAT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146220323	ENSMUSSNP458867	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320131731	CHEV_1_175257390	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48738396					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:173154826 () rs orientation: forward

Symbol	Name	Function Class
Rr423671	regulatory region 423671	1343 bp distal
Rr423672	regulatory region 423672	1295 bp proximal
Rr423673	regulatory region 423673	1651 bp proximal