rs48738467 SNP Detail

Summary

• ID
  rs48738467
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47260584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGTGGAAA TATGATTGGT TTCATTTGCC ATAATAGTCT
  CCAAGTTGAG GGACAAAAGT TAGACTTTAT TTTCTTCTGT GCCCCTTTTG TAAACATACG
  M
  AAAGTCCTGC TATTTTTGCT TTCAGATCTT AAGCCATCTC CCATTCTACT GATTCTGCTC
  ACCTTTCTTT GTTTTTTAGT TTGGGTTGCA ACAGAGCCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148985279	ENSMUSSNP5930188	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324335504	CHEV_13_47202476	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48738467					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47260584 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	248 bp distal
Dek	DEK proto-oncogene	907 bp upstream
Rr479039	regulatory region 479039	672 bp distal
Rr479040	regulatory region 479040	50 bp distal
Rr479041	regulatory region 479041	1641 bp proximal
Tssr119626	transcription start site region 119626	1516 bp downstream
Tssr119627	transcription start site region 119627	697 bp downstream
Tssr119628	transcription start site region 119628	678 bp downstream
Tssr122369	transcription start site region 122369	1731 bp upstream
Tssr122370	transcription start site region 122370	1584 bp upstream
Tssr122371	transcription start site region 122371	1486 bp upstream
Tssr122372	transcription start site region 122372	1406 bp upstream
Tssr122373	transcription start site region 122373	1361 bp upstream
Tssr122374	transcription start site region 122374	1233 bp upstream
Tssr122375	transcription start site region 122375	998 bp upstream
Tssr122376	transcription start site region 122376	980 bp upstream
Tssr122377	transcription start site region 122377	937 bp upstream
Tssr122378	transcription start site region 122378	902 bp upstream
Tssr122379	transcription start site region 122379	887 bp upstream
Tssr122380	transcription start site region 122380	875 bp upstream