rs48738591 SNP Detail

Summary

• ID
  rs48738591
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6241333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCG GCGGCGCCCA CAGAGCCTCG
  R
  TGCTCCTCGG CGTCTCCCTC ACCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146582125	ENSMUSSNP2683185	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48738591					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6241333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	within coordinates
Gm41664	predicted gene, 41664	within coordinates
Kif5b	kinesin family member 5B	within coordinates
Rr346583	regulatory region 346583	1868 bp proximal
Rr353008	regulatory region 353008	within coordinates
Tssr152353	transcription start site region 152353	119 bp upstream
Tssr152354	transcription start site region 152354	26 bp upstream
Tssr152355	transcription start site region 152355	138 bp downstream
Tssr152356	transcription start site region 152356	153 bp downstream