rs48739866 SNP Detail

Summary

• ID
  rs48739866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31350270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGATCATA GACCAGGCAG
  TCAGCCTGAA GATACTGGGA TCTCATGACA CCTGAGGTCA GAGCCTGGGG AGGAGTAAAG
  AGCCGAAGAC AGGAACTGCA ACATATGATG AAAGAATCAT CAGGACAAAG TGAATTCCGA
  GTGGGTCTTG AGTCACGGCC ACTAGATGAC AGAGGGTCAC ACGGGTATGG CAGTGGTACT
  R
  CCTGCTCGGT GACACTCACG AGCATCCCAG CCTTGGCGCA GGTGAAGGCC AGACATGGTT
  TCACCTCGCC CTTTTCTCAA GTTATCAGTC TCTGTTATCT GAGGCAGCAG TTAGGTAGAG
  GAGGAAGGCA AAAACCAGGG CTTGTTGCCA GGAATTCCTG CTGGCCACCT GTCACCCGTT
  GTCCATCTGT GCTAGGCGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60562212	NES16490593	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48739866					SNP	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562212	NES16490593	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31350270 () rs orientation: forward

Symbol	Name	Function Class
Rr334776	regulatory region 334776	470 bp distal
Rr341222	regulatory region 341222	1271 bp distal
Rr341223	regulatory region 341223	1932 bp proximal
Tff3	trefoil factor 3, intestinal	1685 bp upstream
Tssr147270	transcription start site region 147270	1677 bp upstream