rs48739947 SNP Detail

Summary

• ID
  rs48739947
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41443955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCT GTAGGATACA TGCAGATGTA
  R
  CTCGTGTATG CATAGAGAGA GGAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61386538	NES16765693	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		G		G	G		A
ss136357151	ENSMUSSNP190496	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			A				G
ss322926784	CHEV_9_41340742	CHEVERUD	SCREENING_POP	f	SNP								A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48739947					SNP	G	A	A	A	A	?	A	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386538	NES16765693	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41443955 () rs orientation: forward

Symbol	Name	Function Class
Gm48742	predicted gene, 48742	572 bp upstream
Mir100	microRNA 100	1155 bp downstream
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Tssr84510	transcription start site region 84510	1160 bp downstream
Tssr84511	transcription start site region 84511	638 bp downstream