rs48740464 SNP Detail

Summary

• ID
  rs48740464
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:92030641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTGCAGCT GCCTCCTGTC TGTGTGGAGG CCATACTGAC
  TTCAAAGGCA CACTATCTAG GAAGAGACAG TGTTAACACT TTGCTTTGGA AAAGAAAACT
  R
  TAACATTCCC CCCCCCATTC TGTTCATATG GTGTTTCCCC TTTCCTCAAT GAATTATAAC
  TAACTCAAGG CTTACATCAT TTTTTAATAT TACAAAAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145568227	ENSMUSSNP336845	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss322790906	CHEV_8_93827912	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48740464					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92030641 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm45428	predicted gene 45428			1954 bp downstream
Rpgrip1l	Rpgrip1-like			Intron
				Noncoding-Transcript-Variant
Rr382458	regulatory region 382458			within coordinates
Rr406224	regulatory region 406224			1044 bp proximal
Rr407238	regulatory region 407238			1046 bp proximal
Rr667510	regulatory region 667510			928 bp proximal