rs48740490 SNP Detail

Summary

• ID
  rs48740490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24361678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAACATG TGATCTTCCT
  TTCTTGGGCC TCACATGTAC GCAGATGAGA TAAAATTTCC TCTCTTATAT AACATATATA
  CTCAGAAAAG ACCTCGAGCT TGTATTGTGT CATTTCTACG GCTTGGCAGG CTCTCAGGGT
  GTTAACGAAC AGTGCAGTCT CCGGGCTGTG GTGCTGTAGA GAGGTGAGGG GACATCCAAG
  R
  CAAACTTTTG AAGAGGTGAC TGGGACCCTC TGATTTCTTC CTCTCTGCTT TGCTTTCTGC
  AGGCCATGCA GTCAGACCTC CCATGGGCTC ACACCCTGGG GGCACTTGTG CTGCCCCAGG
  CCAGAGGCCA CAGGAAAAGG CAACAGTGAA TCTCTGAAGC CCCGAATCAC ATAAACCTTT
  CTTCTTTACA AATGGATTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60982557	NES16150685	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48740490					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60982557	NES16150685	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24361678 () rs orientation: forward

Symbol	Name	Function Class
Gm4598	predicted gene 4598	within coordinates
Rr643538	regulatory region 643538	344 bp distal
Rr643539	regulatory region 643539	230 bp proximal
Rr643540	regulatory region 643540	493 bp proximal