rs48740612 SNP Detail

Summary

• ID
  rs48740612
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28667167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTAGGTG CCTGACTCCA
  ACCAGAGGGC CAGGATGAGT CAGCATCCAG GCACCAGGAG TCAGAGCACA CTGCACGGTC
  TCCCAAGCAG CAGATGTGGC TGGAGCCACC GCTTCTCTCC TTTCCATCAC TGTCCTTTCA
  CTCTACGTTG GGAGAGATTT TTGATGATGG AATTTCTAGG TCATTATTTG GTCAGCAGCT
  W
  TGGACAAATT TTAGTGTGTC ACAGAGACCT TTTAGACATT AGTAGTGTTT TTCACCATCT
  TTTATTATGT GATTGCTCAC TTCCCTGAGT ACTTTGTCTG TAATTTTGTG ACTATAACTT
  CAAACTCTTC TGCAGATGCT GCTTAGAGTA AGAGAGGACA TTTCTGAAGA ATGAGTATTT
  GGCTAAAGGT TGTTTTGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60561139	NES16570408	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48740612					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60561139	NES16570408	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28667167 () rs orientation: forward

Symbol	Name	Function Class
Fkbp5	FK506 binding protein 5	within coordinates
Gm22146	predicted gene, 22146	within coordinates
Gm55779	predicted gene, 55779	1045 bp downstream
Rr524560	regulatory region 524560	1683 bp distal
Rr524561	regulatory region 524561	1162 bp distal
Rr524562	regulatory region 524562	292 bp proximal