rs48740777 SNP Detail

Summary

• ID
  rs48740777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50408507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GTAAGCTAAT CCAGAGGCGG GGATGTGAGC GAGATCTGGC
  TGTGGAAGTG GGTATGGGAT GAATGCTAAC AGGGAAGGAA GGTTCCAGAC AGGCTGCAGA
  Y
  GTGAACAAAC CAGGCCCAGG TGTGGGTCAG ATAAGAGCCA GGTGCCTTTG CAGAACAGCT
  GGGGGCAAGG GTGGTGGAGG TGGGAGACAG CAGCTGGAGG A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136476475	ENSMUSSNP4834756	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48740777					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50408507 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21724	CpG island 21724	1691 bp proximal
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Rr678655	regulatory region 678655	790 bp distal
Rr678656	regulatory region 678656	247 bp distal
Tssr85026	transcription start site region 85026	406 bp downstream
Tssr85027	transcription start site region 85027	1937 bp upstream
Tssr85028	transcription start site region 85028	1967 bp upstream