rs48740907 SNP Detail

Summary

• ID
  rs48740907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:29691248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGAGACA GGGTCTCACT
  TTGTAGTTTT ATCTGCCCTG TAACTCACTG TGTACGCTAA GGTGGCCACT AACTCCCAAA
  GATCCTCCTG CCTCTGACTC CGGAGTAGTG GGATTAAATT AAAGGCAAGC ACCACCACGC
  CAGGCAATAC AAAAGTTGTG ACAGATTTTT CTCCCCTAAA AGTGTAGCTA GTCCTAAGCC
  Y
  AAGACTTTAC CCAGTTTGAA AGAACTTGGG AAGCAAGTCT CCAATTACTG GAAAAGAAAA
  AAATACAGCC TGAGAAGGTC GTATCAGTGC CAGAACCATC TGCCCACCTG TGTGACTTAG
  GTGAGACTCC TTGGCGCATT TCTACAAGAC TCTCTTGGGG CCCTGGAAAT AGGTGTGGTT
  GTATCAGATT CATCTCTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62190352	NES17192638	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48740907					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62190352	NES17192638	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:29691248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6266	CpG island 6266	392 bp distal
Gm47414	predicted gene, 47414	1196 bp upstream
Rr369802	regulatory region 369802	1113 bp downstream
Rr369803	regulatory region 369803	763 bp downstream
Rr489727	regulatory region 489727	973 bp distal
Rr489728	regulatory region 489728	94 bp distal
Selenok	selenoprotein K	within coordinates
Tssr124803	transcription start site region 124803	957 bp downstream
Tssr124804	transcription start site region 124804	930 bp downstream
Tssr124805	transcription start site region 124805	829 bp downstream
Tssr127829	transcription start site region 127829	1051 bp upstream