rs48741211 SNP Detail

Summary

• ID
  rs48741211
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:128064437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGCTAAA GCAAGAGAGG
  AGATAGAATC ATGACAATCT ACTGGATGTA CACCACATTT GTGGCTGAGG CCCCTAGGGG
  TCAGACGAAG GGATGGCATT CCCTGCCTGA GACTGGAGTT AACAGTGGTT GTGAGCTGCA
  TATGAGTGCT GAGAACCAAA CTGGAAGCCA CTGTAAGTGT GCTCTTAACC AGCTCTCCCG
  K
  GCCCCCAGCT GCACACTGTC TCATTGAAGG AGAGAAAAGG TCTGGTGGCC AACAGAGAGC
  TTTGGGGTAG CTTATAGATC TGCTTAGCTG CATACTGAAA CCCTACCTGA ATTTACAGGT
  ACAGTGGGAG ATTGGAGGCT GCTTCTCCAT GAGCCTAGGA AGGAGAGAGT AAGTCTGAAC
  GAGAAACGGA TTATATCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145891488	ENSMUSSNP3327627	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48741211					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128064437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19791	CpG island 19791	475 bp distal
Gm32816	predicted gene, 32816	within coordinates
Rr368466	regulatory region 368466	776 bp downstream
Rr656041	regulatory region 656041	1727 bp distal
Rr656042	regulatory region 656042	624 bp distal
Rr656043	regulatory region 656043	within coordinates
Rr656044	regulatory region 656044	366 bp distal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1	996 bp upstream
Tssr2414	transcription start site region 2414	1518 bp upstream
Tssr69425	transcription start site region 69425	739 bp downstream
Tssr75110	transcription start site region 75110	1536 bp upstream
Tssr75111	transcription start site region 75111	1387 bp upstream
Tssr75112	transcription start site region 75112	1326 bp upstream
Tssr75113	transcription start site region 75113	1313 bp upstream
Tssr75114	transcription start site region 75114	1153 bp upstream
Tssr75115	transcription start site region 75115	1091 bp upstream
Tssr75116	transcription start site region 75116	1051 bp upstream