rs48741409 SNP Detail

Summary

• ID
  rs48741409
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127432138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGATCAGAG GCAGACCTGC ACTTCCTCCA TCTGGATTTT
  ACTGCCCCGC TGTCTCCATA CATGAGTTTT CTCAGCTCTG CTGTCAGAGT CGGTGCTAGA
  M
  CGCCACGCTG AGTGAGGGCT GGTGGGTGCC AGAGGGAGCA GGAGTGGGGA TCTGGGGGGC
  TTCCCCGGAG CTGTTGTTGA AAGAGGCTCC GCCCTTCCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147535459	ENSMUSSNP5981076	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48741409					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127432138 () rs orientation: forward

Symbol	Name	Function Class
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564567	regulatory region 564567	1625 bp distal
Rr564568	regulatory region 564568	within coordinates
Tssr20027	transcription start site region 20027	103 bp upstream
Tssr20028	transcription start site region 20028	524 bp upstream