rs48741572 SNP Detail

Summary

• ID
  rs48741572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30256793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCCTGTGG CAGCAATGGA ACAATCCCTG CAGGGAGAGA
  CATGGTGTCA GGAGGCTTTA ATAAACAGCT GCTCAACGCT GCCCCCCAAG GTGGAAGTGA
  Y
  GTAGTTCAGG AACAGAGCAT TTGCCTAGCA TGGGCAAAAG CCCTGGGGTT CTATCGCTAG
  CTCTAAAAAC AAACAAAAAT TAACATCCTG GGGATTATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60990770	NES16136606	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C	T	T	C	C		T	C	T	T		T
ss148682472	ENSMUSSNP6299132	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss322135254	CHEV_7_31342387	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48741572					SNP	C	C	C	C	C	T	C	T	T	C	C	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990770	NES16136606	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30256793 () rs orientation: forward

Symbol	Name	Function Class
Hspb6	heat shock protein, alpha-crystallin-related, B6	1925 bp downstream
Lin37	lin-37 DREAM MuvB core complex component	within coordinates
Tssr71791	transcription start site region 71791	1374 bp downstream
Tssr71792	transcription start site region 71792	1405 bp downstream