rs48743009 SNP Detail

Summary

• ID
  rs48743009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151254875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agaatgtag cacgatggta gagtgactgt
  ccaaaatgta tgacactctg gattcCAACT CTTACGGTAT CAGACAGCAC TGCTTTTTAA
  AAACAACCTT AAAACACTTG TATCTAGTAT TTCTTTCCCT ATAAAAGGAA AAGGCAGAAA
  Y
  ATTTTGAGTT CTAAACTAGA AATCCATATT ATCTATAGGA AAGAAAGAAA GGTAAATATA
  AAAGCCAATT ATCTGTTAGG Tgcagtggca cactctcctt gagtttgagc cagcctggtc
  cacacctgac catccaaggc taaattagag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	SM/J	WSB/EiJ
ss60818937	NES16490518	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T			C
ss320056014	CHEV_1_153226254	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	SM/J	WSB/EiJ
rs48743009					SNP	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60818937	NES16490518	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151254875 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr420286	regulatory region 420286			1586 bp distal
Swt1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant