rs48746979 SNP Detail

Summary

• ID
  rs48746979
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:41021332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACC TTCCCTGAGG ATCCTCCATG
  W
  ACTGAACTCT CTGGATTGAG TCTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146399558	ENSMUSSNP6972404	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48746979					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41021332 () rs orientation: forward

Symbol	Name	Function Class
Dntt	deoxynucleotidyltransferase, terminal	within coordinates
Rr370497	regulatory region 370497	1609 bp downstream
Tssr5510	transcription start site region 5510	1677 bp upstream
Tssr159242	transcription start site region 159242	1757 bp upstream
Tssr159243	transcription start site region 159243	1730 bp upstream
Tssr159244	transcription start site region 159244	1713 bp upstream
Tssr159245	transcription start site region 159245	1700 bp upstream
Tssr159246	transcription start site region 159246	838 bp upstream
Tssr159247	transcription start site region 159247	826 bp upstream