rs48747061 SNP Detail

Summary

• ID
  rs48747061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:46964131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAATGAAG AATCAATTAA TTGTTGAATT
  ATGGTCTAGG AAAATACATT GAGGAGAAAA ATCTCAAACA AGAAACAAAT TTCACAGAGC
  CAAACCTATA AATTCCATAA AAAAGAAATT CCATAAAAAA GAATTATTTA TTGATAtgtg
  Y
  gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgCTGCT AGAGACTGAA
  CCCAGAGTCC AGAGTCTTCT ACTAAGCTAT GTTCTGAGTC TCAGGGTCAG ATTTAGATTC
  TTGCAATTCT ATAAAAAAAA ATGCTGAAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss149066359	ENSMUSSNP561072	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss319712745	CHEV_1_46981816	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48747061					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:46964131 () rs orientation: forward

Symbol	Name	Function Class
Rr410623	regulatory region 410623	205 bp proximal
Tssr11557	transcription start site region 11557	785 bp downstream
Tssr11558	transcription start site region 11558	814 bp downstream