rs48747238 SNP Detail

Summary

• ID
  rs48747238
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30951607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAAGGCC TGGTAGACTT
  GGTGTTTTTT TTTTTTTTCT GTTTGTTGTG TTTTTTTTTC ATTTTTAGAA AAAAAATTTA
  ATATCTAGTG TGTGAGTTTA CCTACTTGTA GGTACATGCA CATGCAGTAC TTGTAGGGCC
  AGGGAGGGGG GTCTGATCCC CTGTAACTGT AGGTACAGGT GGTTGTTAGC CACATACGCG
  A
  GAACCTGGAA CTCCAGTCCT CTGGAAGAGC AACAAGGACT ATTATCCAAG TTGAGCCATC
  TCTCCAATTA GGGAAAATAT TTTTTAACTT GTTTTAATGG TTTGTTTTAT ACTTTGATTT
  CCTCTGAGTT TGTTGTCATG AGGGTAGCAT ATAGTGAGCC TGCACTCTGA TAGGAGAGAT
  TCCGGGGGAG AGGCACAGGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148829225	ENSMUSSNP3766821	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs48747238					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30951607 () rs orientation: forward

Symbol	Name	Function Class
Irf4	interferon regulatory factor 4	648 bp downstream
Rr476644	regulatory region 476644	1396 bp distal
Rr476645	regulatory region 476645	16 bp distal
Rr476646	regulatory region 476646	146 bp proximal
Tssr119115	transcription start site region 119115	1445 bp downstream