rs48748502 SNP Detail

Summary

• ID
  rs48748502
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149561958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAC CATGTAATTG TACTTAATGT
  S
  TGTAATGCTG AGCTAACCTG TAAAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144703256	ENSMUSSNP811555	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321721104	CHEV_5_150441068	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48748502					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149561958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17098	CpG island 17098	1511 bp distal
Gm20005	predicted gene, 20005	239 bp upstream
Rr399535	regulatory region 399535	1981 bp downstream
Rr625554	regulatory region 625554	712 bp distal
Tssr49918	transcription start site region 49918	1969 bp downstream
Tssr49919	transcription start site region 49919	1954 bp downstream
Tssr49920	transcription start site region 49920	1652 bp downstream
Tssr54651	transcription start site region 54651	1798 bp upstream