rs48748741 SNP Detail

Summary

• ID
  rs48748741
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25956722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAAGATG TCTAAATGTT
  GAGCACTATA GTATTTGGAA GTAGGACACA GAGTATTTTG TGTATTGGGT CATATATTTC
  ATTTGAGAGG AGCATGGAAC AAGAGAATGG AGGACAGAAA TGAAGAATAA TGGGATGAAG
  TTTAGGAAAA TGACTGCTAA AGTGTTTTTC TAAATACAGA TGTCCCAAAA GACTTCACAG
  R
  AAAAATTAGT GACACAATAG AGATGAGACA CTATCTGGGA AGTAAGAAAT AATGACTATA
  TGGTGGCATT TTTAAATTAC AGGTTCAGAA AGATGGTGGA TATGAATATT GTTTTGAAAA
  TGCTCCCATT ACATTTCTGA ATAATTTATG ACATAGATAT TGGTCTACAG TACAAAGCAC
  TCACCAAAGT TTGGGGATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60978832	NES16140060	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48748741					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60978832	NES16140060	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25956722 () rs orientation: forward

Symbol	Name	Function Class
Vmn1r-ps86	vomeronasal 1 receptor, pseudogene 86	1671 bp downstream