rs48748742 SNP Detail

Summary

• ID
  rs48748742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:64834549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGACTAT TGTTTAAATA
  TGTAATGTTA AGCTTAGGTT TAAAAAAGCT GGTAATTTGG GTTTTTGTCA TTTGCTTAAA
  AAAAAAATAA ATGCGAATGT GTTTGGTGCA TTCTTTCATG AGTGGGGTCT GCAAAAAAAA
  AAAAAAGATT TTAATATAAA TGATAAAGAG ACAGTTTTGA TATATAGACC AAGGCATTTA
  R
  ATACATGTTC TGGTGCCAGG ACAATGACTC AGCAGATAAT CAACTTGCTA CCAAAGCTGA
  AGACCTGAGT CTGATACCCA AAGTTCACAA GAAATAAGGG AAGAACTGAC TTCCACAACT
  TGCTCTCTAA CCTCCATACG TATAAGATGG CACACATTCG CACATGCGTA AACTAGATAG
  ATAGATGATA GATAGATAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61635081	NES17583705	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48748742					SNP	G	G	G	G	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61635081	NES17583705	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:64834549 () rs orientation: forward

Symbol	Name	Function Class
Dnajb6-ps	DnaJ heat shock protein family (Hsp40) member B6, pseudogene	774 bp downstream
Gm59451	predicted gene, 59451	within coordinates