rs48748843 SNP Detail

Summary

• ID
  rs48748843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:65143193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAGGCCC TAAGTGGGCA
  CTCCACCACT CATCTGCACC CAGTCCACAG CATTTGGGCA GATGTTCATA AAAAAATTAC
  CTAGGCTAGG AAAACAAACT TGACTCTTTA TTCATGCTAA AAAAAAAATA AAATAAAATG
  AATATAAAAA AAAGTCTCAT GGAAATTTTC AATCAGTGAA TTTAAAGCAG AATCCAGAGT
  R
  TTACATCAGA GCCTGTGCGT AAAGGTACCA ACTCTGACAG CCTGGCTTTT ATTTCAAGGA
  CCTGCAGGGT GGAAGAAAGA GCCAGCTTCT GAAAGTTGAC CTTTGACTTT CACACACCAT
  GATGTGCATA CACGGAAGCA CATGCATGCA TGGATAAATA AATAATAAAG GTTTTACAAA
  CAAATCCCGA AGGTACTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60622508	NES16302429	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48748843					SNP	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60622508	NES16302429	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:65143193 () rs orientation: forward

Symbol	Name	Function Class
Cpe	carboxypeptidase E	within coordinates
Rr664168	regulatory region 664168	1602 bp distal
Rr664169	regulatory region 664169	1055 bp distal
Tssr81419	transcription start site region 81419	671 bp upstream