rs48750321 SNP Detail

Summary

• ID
  rs48750321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:9384543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAATGGG ACACAGGACC
  ACAAAGTAAT AGGACAGTTA TTAGTTTATT CATCTTCATA TAGATTAGGT TTGTAAGGTT
  GAGAACAAAC TGACCCTACT TTCAAGAAAT GCCCAGGTAC ACTAAGATAA CGAATAAATG
  CAAAACCAGT AAGTCTGTTT GCATGATGCA CAAAGAGACT ATTGCTGAAT CTATTTTTTT
  Y
  TCTCTCTCTC TTGGAAAGAA CAGAGTCTAC TGTACAGGAA CACTAAGCTC TGGGACAAAG
  CCAAAAGACT CTCGAGACTG AAACTTGGAG TGTGTAGCCT CATCCCTCCA GGATCCATAA
  TGAAACTATG AATGTAGCAC AAGCAGAGAA GAGTATCCGC TAACATTGTA TAGTTGAAAC
  CACTGCAAAC ACGAGACCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146287090	ENSMUSSNP817891	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48750321					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9384543 () rs orientation: forward

Symbol	Name	Function Class
Gm13219	predicted gene 13219	within coordinates
Gm75238	predicted gene, 75238	1769 bp upstream
Rr508	regulatory region 508	within coordinates
Tssr16055	transcription start site region 16055	1471 bp downstream
Tssr22534	transcription start site region 22534	1768 bp upstream