rs48750709 SNP Detail

Summary

• ID
  rs48750709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57386882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACGGTGA GTCCCAGGAC
  AACCTGGAAC TCTCTACATA GGGAGATCCT GTCTCAAAAA CACCAAAACC CAAACCAAAC
  AAAATGCAGA AGATGCATTC AGTGATTCAG TGTGGCCACA CTGGAAAGGG GGGGGGGACG
  GGATGGGGGA GATCCAGTGA CCTTCAGGTC CATCTTTCCA AAGTACAGAC TGTGGCCCCA
  R
  TATGCATGTT CCTGGTGTGC AAGTGGCTTA TCTTACACTA CAGAGTTGCT CTGGTCTAGC
  CTGGTCTGTT TGGCTCTGCA ATCCCTGTAC CCCACCACTC CAGGAGCTGA TCTTCAGTGG
  CTGGTGGGCC CCTCCACTCC CTAGCTGCAC TCAGAGAAGA AACTAAATCA AACAGAAACC
  ACACCAAAGC AATGACTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62807957	NES17358180	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48750709					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62807957	NES17358180	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57386882 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9393	CpG island 9393	1207 bp proximal
Dennd1c	DENN domain containing 1C	1364 bp upstream
Gm56907	predicted gene, 56907	within coordinates
Rr529265	regulatory region 529265	1383 bp distal
Rr529266	regulatory region 529266	1291 bp distal
Rr529267	regulatory region 529267	685 bp distal
Rr529268	regulatory region 529268	within coordinates
Tssr5182	transcription start site region 5182	337 bp upstream
Tssr145371	transcription start site region 145371	1273 bp downstream
Tssr145372	transcription start site region 145372	365 bp upstream
Tssr145373	transcription start site region 145373	712 bp upstream
Tssr145374	transcription start site region 145374	806 bp upstream
Tssr148878	transcription start site region 148878	1465 bp upstream
Tssr148879	transcription start site region 148879	1424 bp upstream
Tssr148880	transcription start site region 148880	1398 bp upstream
Tssr148881	transcription start site region 148881	1363 bp upstream
Tssr148882	transcription start site region 148882	480 bp downstream
Tssr148883	transcription start site region 148883	575 bp downstream
Tssr148884	transcription start site region 148884	648 bp downstream
Tssr148885	transcription start site region 148885	725 bp downstream
Tssr148886	transcription start site region 148886	752 bp downstream
Tssr148887	transcription start site region 148887	776 bp downstream
Tssr148888	transcription start site region 148888	803 bp downstream
Tssr148889	transcription start site region 148889	840 bp downstream
Tssr148890	transcription start site region 148890	936 bp downstream
Tssr148891	transcription start site region 148891	1054 bp downstream
Tssr148892	transcription start site region 148892	1074 bp downstream
Tssr148893	transcription start site region 148893	1288 bp downstream
Tssr148894	transcription start site region 148894	1360 bp downstream
Tssr148895	transcription start site region 148895	1764 bp downstream
Tssr148896	transcription start site region 148896	1826 bp downstream
Tubb4a	tubulin, beta 4A class IVA	179 bp downstream