rs48750833 SNP Detail

Summary

• ID
  rs48750833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74697751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTG CATTTTGACC AAAGTTGAAG
  R
  ACTGTTTCTA CTTGTGGACC AATCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148671550	ENSMUSSNP6891700	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321569984	CHEV_5_74933115	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48750833					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74697751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15972	CpG island 15972	939 bp distal
Fip1l1	factor interacting with PAPOLA and CPSF1	within coordinates
Rr399136	regulatory region 399136	1589 bp downstream
Rr613306	regulatory region 613306	1599 bp distal
Rr613307	regulatory region 613307	579 bp distal
Tssr46674	transcription start site region 46674	1566 bp downstream
Tssr46675	transcription start site region 46675	1532 bp downstream
Tssr46676	transcription start site region 46676	1399 bp downstream