rs48751375 SNP Detail

Summary

• ID
  rs48751375
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45173598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGATTTCA CACTGTTCTA
  AGGACAGACC AACATGAAAG ACTGAGGCTG GGACCATACA TCCTGACCCA GCCTGCTTGC
  TTCTGCATAC CTGGGGGACT CTACTTAAAC CTAAACACCA TGTTAACATG AATGCCCTTA
  ATACCCTGGA AAATGGGCTT TCAGGACTAC CAGCCCTGGT TGTTTCTCTT CTCAAAGTGG
  Y
  CACATTGAAT ACATTCCCTC TTGCTGGTTT TCACTCTGAG TCTTTGATGA GTCTTTGATC
  TATCTTGTTG GGGTCCTGTC AGGGGCTATG CTCTGACTCA CAGCTCTGGT AATAATTCTG
  ACAAGTGCAT CTGACAGAGG GGGGCTGGGG AGATCCCCCA GAAGCCCAGC TGCTTCTGCC
  GAGAGAAAAA GGCACATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61388326	NES16765007	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T		T	C	C		C
ss136408156	ENSMUSSNP7246799	ENSEMBL	ENSEMBL_Sanger	f	SNP	T					T
ss322942705	CHEV_9_45070383	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48751375					SNP	T	T	T	T	T	T	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388326	NES16765007	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45173598 () rs orientation: forward

Symbol	Name	Function Class
Gm20612	predicted gene 20612	1010 bp downstream
Il10ra	interleukin 10 receptor, alpha	within coordinates
Rr677873	regulatory region 677873	501 bp distal
Tssr89253	transcription start site region 89253	589 bp downstream
Tssr89254	transcription start site region 89254	656 bp downstream
Tssr89255	transcription start site region 89255	746 bp downstream
Tssr89256	transcription start site region 89256	770 bp downstream
Tssr89257	transcription start site region 89257	1876 bp downstream
Tssr89258	transcription start site region 89258	1917 bp downstream
Tssr89259	transcription start site region 89259	1940 bp downstream