rs48751973 SNP Detail

Summary

• ID
  rs48751973
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20789051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGAACT GTGTTAAATA
  TCAAGGAAGG GAATGTTTGG CCTGCTGCTA AGCATAGACA TTGGAATACA TTCTACCAAC
  ATCTTAATTA GCAATATGAG GGAATCCAAT TCTTCATGTT CCATAGGGAA ACACTATTGC
  ACATAAGAGC ATGCTTCTAG AGTCAGGTTG CCTGAGTGCA AAACCTACCC ACTCTCATTT
  K
  TTCCTACATC ACTTCATCCT CTGTGCTTTG ATTTTCTTAA CTTGAAAAAC ATATGATAAC
  AGAAGTTCCT GTTTCTGTTA AATAGAAGGT ACAGAGAGGG TGCGAGTATT AGATGAATAC
  CAAAGACTTC CCAGCACATG CTGGGTACTA AGTGCCTATA ATTGCTGTAC CTATGATTAT
  CATCAATGAT GTTCACTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61757684	NES17682692	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48751973					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61757684	NES17682692	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20789051 () rs orientation: forward

Symbol	Name	Function Class
Elmo1	engulfment and cell motility 1	within coordinates
Tssr118599	transcription start site region 118599	513 bp upstream
Tssr118600	transcription start site region 118600	556 bp upstream