rs48752051 SNP Detail

Summary

• ID
  rs48752051
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTAGGTC CAATACAAAA
  CCAAACAAAA ACAAAACAAA GACAACAAAT AAAAAACAAC ACTAGCCAAA ATAGCAAGAC
  CAGAACACGA GGCTAGAGGG GAATTGTACC AACACAAACA TCCTCAGAAA CTGAGCATTC
  ACGGTCTGGC CGCAGAAATC CCCGCCATTC ACAACCAACC TGGGATGGGT TTATGATGCC
  R
  GCTACATGGA AGGCTGAGGC AGGAGGATTC TAAATTTAAG GCCAGCTGGG GCAACTGACT
  GAGACCCTAT CTCACAATAA AAAGTAAACG GAGACCTGAG AATTCAGCCT CGTGGTAGGG
  AGTCTGCCTA GCATGCCTTT GAAGCACTAA ATTCAATCTC TAGCATCGAA GAAAAGTCAT
  TAACGTTCCT TTGCCTCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132716409	ENSMUSSNP5342873	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323830213	CHEV_11_99853861	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48752051					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	994 bp proximal
Krtap17-1	keratin associated protein 17-1	687 bp downstream
Tssr110721	transcription start site region 110721	1445 bp downstream