rs48752064 SNP Detail

Summary

• ID
  rs48752064
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50409349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTCTTT TTAGTCCTAA
  CAGGAGCTTT TACTATGAGG GATAATGTTA TTTCCCAGAC ACAGAGCTAT GGTGAGCACC
  AAGAGGAAAC TTAAAAAAAT AAAAGTGTAG CAGTCAGAGA TGTGGCTTAG TTAGTAGAAC
  GCTTGCCTGA CACATACCTC GTTCTGGGTT CACTGTTCTA CATTTTATAA AGCAGGTGTG
  K
  CAGCATACAC CTGCAGTGTC TATACACAAG AAGGAGAGTC GGGAGTTCAA GGACAGCCTC
  GGTTACGTTT GAATCCAGCT TAGGATGAGA TCCTGTTTCG AAATACACAA ATTGTGTACA
  GTAGCCACTG AGCAAGAAGA AGCCAGAGCG AAGAAGTGAC CAGTCTTGCC CCTAAGTACC
  AGAGCTGGGA TGCAGATCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136476490	ENSMUSSNP3216367	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48752064					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50409349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21724	CpG island 21724	849 bp proximal
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Rr678655	regulatory region 678655	1632 bp distal
Rr678656	regulatory region 678656	1089 bp distal
Tssr85026	transcription start site region 85026	1248 bp downstream
Tssr85027	transcription start site region 85027	1095 bp upstream
Tssr85028	transcription start site region 85028	1125 bp upstream
Tssr85029	transcription start site region 85029	1160 bp upstream
Tssr85030	transcription start site region 85030	1205 bp upstream