rs48752631 SNP Detail

Summary

• ID
  rs48752631
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134484143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAA CCGACACGTG CGCTACGTGC
  W
  GCGCTAGCCG CCGCCCCCTC CCGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145508278	ENSMUSSNP2655717	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss319983152	CHEV_1_136452982	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48752631					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134484143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi772	CpG island 772	within coordinates
Gm57134	predicted gene, 57134	within coordinates
Rr367005	regulatory region 367005	555 bp upstream
Rr418945	regulatory region 418945	within coordinates
Rr418946	regulatory region 418946	414 bp distal
Rr418947	regulatory region 418947	8 bp proximal
Rr418948	regulatory region 418948	687 bp proximal
Tssr13798	transcription start site region 13798	582 bp downstream