rs48753108 SNP Detail

Summary

• ID
  rs48753108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45865042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTTATA GACACGTGTC
  TACACACGTC CCTGTGCACA CACTGTCACG GGAGATCAAG ACGTGCCCTC AAGCCCTCAA
  TCTTCTTCCT CATGAACTAG GAAAGCAGCA AGAAGCTCCG GTTCCACTGC TACTCTGGAG
  GCCAGAGCCC TGCAGGGAGG GGTGTAGGGA ACTGTGTCGA AATACAAGTT GTCTCTCTAG
  Y
  TCTGACCATG GGCCAAGCTC TGAAGTGACT TTCCATCTGA ACCTTGATTC ACCCTCTCTA
  AGAAAATAAA GAAATAACCC ACCCTCTCTG CTGCGGACAA AGCTACACAG GACAGTGGGC
  GTTTAAAAGT GAAGAAATCA CAACTGCAGA CAACTAGTTA CTAGGTTGCT GAAACCAAAT
  CTAGGGGTAA CGTTTCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136420924	ENSMUSSNP5760707	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48753108					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45865042 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A830035O19Rik	RIKEN cDNA A830035O19 gene			357 bp upstream
Cpgi21698	CpG island 21698			689 bp proximal
Rr678012	regulatory region 678012			within coordinates
Rr678013	regulatory region 678013			1223 bp proximal
Sidt2	SID1 transmembrane family, member 2			Intron
				Noncoding-Transcript-Variant
Tssr84819	transcription start site region 84819			1583 bp upstream
Tssr89292	transcription start site region 89292			860 bp upstream
Tssr89293	transcription start site region 89293			60 bp upstream
Tssr89294	transcription start site region 89294			1222 bp downstream
Tssr89295	transcription start site region 89295			1426 bp downstream
Tssr89296	transcription start site region 89296			1452 bp downstream
Tssr89297	transcription start site region 89297			1482 bp downstream
Tssr89298	transcription start site region 89298			1509 bp downstream
Tssr89299	transcription start site region 89299			1535 bp downstream